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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19427s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 305aa MW: 34348.9 Da PI: 4.5686 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 62 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Bostr.19427s0014.1.p 62 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 115 5568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129 | 2e-41 | 61 | 153 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++e+L + Bostr.19427s0014.1.p 61 EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQ 149 69*************************************************************************************99 PP HD-ZIP_I/II 90 elke 93 e+++ Bostr.19427s0014.1.p 150 EISK 153 9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.908 | 57 | 117 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-18 | 59 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.4E-17 | 60 | 121 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-15 | 62 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.09E-15 | 62 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 64 | 124 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.3E-6 | 88 | 97 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.3E-6 | 97 | 113 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.2E-17 | 117 | 158 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MTKRLSSSDS VGVLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS 60 EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP RQVAVWFQNR RARWKTKQLE 120 KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG EEEEEENNAA AATTESDISV 180 KEEPEKITEP PSSPPQFLEH SDGLNYRSFT DLRDLLPLKA AASSLAAAGS SDSSDSSALL 240 NEESSSNVMV AAPVTVPGGN FFQFVKKEQT EDHDGFLSGE EACEFFSDEQ PPSLHWYSTV 300 DHWN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 117 | RRARWKTKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00271 | DAP | Transfer from AT2G22430 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY060569 | 0.0 | AY060569.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds. | |||
GenBank | AY063819 | 0.0 | AY063819.1 Arabidopsis thaliana putative homeodomain transcription factor ATHB-6 (At2g22430) mRNA, complete cds. | |||
GenBank | AY094457 | 0.0 | AY094457.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds. | |||
GenBank | AY122903 | 0.0 | AY122903.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds. | |||
GenBank | X67034 | 0.0 | X67034.1 A.thaliana mRNA Athb-6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565536.1 | 1e-180 | homeobox-leucine zipper protein ATHB-6 | ||||
Swissprot | P46668 | 0.0 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | D7LE05 | 1e-178 | D7LE05_ARALL; Putative uncharacterized protein | ||||
STRING | AT2G22430.1 | 1e-179 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-149 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19427s0014.1.p |